Developing a Transformer-based Clinical Part-of-Speech Tagger for Brazilian Portuguese

Autores

  • Elisa Terumi Rubel Schneider Pontifícia Universidade Católica do Paraná - PUCPR
  • Yohan Bonescki Gumiel Universidade Federal de Minas Gerais - UFMG
  • Lucas Ferro Antunes de Oliveira Pontifícia Universidade Católica do Paraná - PUCPR
  • Carolina de Oliveira Montenegro Pontifícia Universidade Católica do Paraná - PUCPR
  • Laura Rubel Barzotto Pontifícia Universidade Católica do Paraná - PUCPR
  • Claudia Moro Pontifícia Universidade Católica do Paraná - PUCPR
  • Adriana Pagano Universidade Federal de Minas Gerais - UFMG
  • Emerson Cabrera Paraiso Pontifícia Universidade Católica do Paraná - PUCPR

DOI:

https://doi.org/10.59681/2175-4411.v15.iEspecial.2023.1086

Palavras-chave:

Natural language processing, Electronic Health Records, Deep Learning

Resumo

Electronic Health Records are a valuable source of information to be extracted by means of natural language processing (NLP) tasks, such as morphosyntactic word tagging. Although there have been significant advances in health NLP, such as the Transformer architecture, languages such as Portuguese are still underrepresented. This paper presents taggers developed for Portuguese texts, fine-tuned using BioBERtpt (clinical/biomedical) and BERTimbau (generic) models on a POS-tagged corpus. We achieved an accuracy of 0.9826, state-of-the-art for the corpus used. In addition, we performed a human-based evaluation of the trained models and others in the literature, using authentic clinical narratives. Our clinical model achieved 0.8145 in accuracy compared to 0.7656 for the generic model. It also showed competitive results compared to models trained specifically with clinical texts, evidencing domain impact on the base model in NLP tasks.

Biografia do Autor

Yohan Bonescki Gumiel, Universidade Federal de Minas Gerais - UFMG

Universidade Federal de Minas Gerais - UFMG. Laboratório de Informática Biomédica - Instituto do Coração - HC FMUSP.

Lucas Ferro Antunes de Oliveira, Pontifícia Universidade Católica do Paraná - PUCPR

Pontifícia Universidade Católica do Paraná - PUCPR. Universidade Federal de Minas Gerais - UFMG.

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Publicado

20-07-2023

Como Citar

Schneider, E. T. R., Gumiel, Y. B., Oliveira, L. F. A. de, Montenegro, C. de O., Barzotto, L. R., Moro, C., … Paraiso, E. C. (2023). Developing a Transformer-based Clinical Part-of-Speech Tagger for Brazilian Portuguese. Journal of Health Informatics, 15(Especial). https://doi.org/10.59681/2175-4411.v15.iEspecial.2023.1086

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